BAR-PELED LIRON (US)
YANG DIANE (US)
LIAU BRIAN (US)
HARRY STEFAN (US)
HARVARD COLLEGE (US)
CLAIMS 1. A method of targeting or engaging one or more targets with a chemical compound, the method comprising: binding a specificity group of the chemical compound to a specific target site, and reacting at least two reactive moieties of the chemical compound with respective reactive sites to form one or more covalent bonds, wherein the one or more targets comprise the specific target site and at least two reactive sites; and optionally wherein the chemical compound comprises a scaffold disposed between the specificity group and the at least two reactive moieties. 2. A method of targeting or engaging one or more targets with a chemical compound, the method comprising: providing the chemical compound to the one or more targets, wherein the chemical compound comprises: a specificity group configured to interact with a specific target site of the one or more targets, and at least two reactive moieties, wherein each of the at least two reactive moieties is configured to react with a respective reactive site of the one or more targets; and incubating the chemical compound with the one or more targets under conditions configured to bind the specificity group to the specific target site and to react the at least two reactive moieties with the respective reactive site to form one or more covalent bonds. 3. A method of targeting or engaging one or more targets with a chemical compound, the method comprising: providing an effective amount of the chemical compound, wherein the chemical compound comprises a structure having Formula (I): wherein: S comprises a scaffold; each SG comprises, independently, a specificity group configured to interact with a respective specific target site of the one or more targets; each of RM1 and RM2 comprises, independently, a reactive moiety configured to react with a respective reactive site of the one or more targets to form one or more covalent bonds; and n is an integer of 1 or more. 4. A method of identifying one or more targets, the method comprising: providing a chemical compound to a test sample, wherein the chemical compound comprises a structure having Formula (I); and identifying a biological target bound to the chemical compound. 5. A method of treating a disease, the method comprising: administering a therapeutically effective amount of a chemical compound to a subject in need thereof, wherein the chemical compound comprises a structure having Formula (I). 6. The method of claim 5, wherein the disease comprises cancer. 7. The method of claim 6, wherein the cancer comprises non-small cell lung cancer (NSCLC), lung adenocarcinoma, lung cancer, breast cancer, or colorectal cancer. 8. The method of claim 7, wherein the cancer is characterized by a presence of an EML4-ALK fusion gene, an EML4-ALK fusion protein, an EML4 fusion gene, an EML4 fusion protein, an ALK fusion gene, an ALK fusion protein, or a variant thereof. 9. The method of any one of claims 1-8, wherein the specificity group and/or the scaffold, if present, comprises an E3 ubiquitin ligase (E3) ligand. 10. The method of claim 9, further comprising a linker disposed between the specificity group and the E3 ligand and/or between the scaffold and the E3 ligand. 11. The method of any one of claims 1-5, wherein the chemical compound comprises a structure having Formula (Ia): pharmaceutically acceptable salt thereof; wherein: S comprises a scaffold; each of SG and SG’ comprises, independently, a specificity group configured to interact with a respective specific target site of the one or more targets; each L comprises, independently, a linker; each of RM1 and RM2 comprises, independently, a reactive moiety configured to react with a respective reactive site of the one or more targets to form one or more covalent bonds; each M comprises, independently, a ligand; n1 is an integer of 0, 1, or 2; n2 is an integer of 0, 1, or 2; and n1 + n2 is greater than or equal to 1. 12. The method of claim 11, wherein the linker comprise a covalent bond, oxy, carbonyl, imino, nitrilo, an atom, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroalkylene group, an optionally substituted arylene group, or an optionally substituted heteroarylene group, which can further optionally include a click chemistry signature. 13. The method of claim 11, wherein the linker comprises –LA-LB-LC–, and wherein each of LA, LB, and LC comprises, independently, a linker. 14. The method of claim 13, wherein each of LA and LB is, independently, a covalent bond, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroalkylene group, an optionally substituted arylene group, or an optionally substituted heteroarylene group. 15. The method of claim 13, wherein LC comprises a click chemistry signature. 16. The method of claim 11, wherein the ligand comprises a binding ligand or a targeting ligand. 17. The method of claim 11, wherein the ligand comprises an E3 ubiquitin ligase (E3) ligand. 18. The method of any one of claims 1-5, wherein the one or more targets comprises a protein, a peptide, a fusion protein, or a constitutively active receptor protein. 19. The method of claim 18, wherein the one or more targets is, independently, selected from the group consisting of EML4-ALK, EML4, EML4 fusion protein, ALK fusion protein, PSME1, PSME2, TMX1, TXN, TJP2, PDIA6, P4HB, AGR2, PDIA3, PDIA4, PPFIA1, SMARCC2, GCLC, NPEPPS, PDCD61P, PRDXl, ERO1A, PCBP1, CTTN, PRDX2, PRDX3, RARS1, TXNDC17, RPL21, S100A2, KIF5B, and RPL18. 20. The method of claim 18, wherein the one or more targets comprises an ALK fusion protein having one or more mutations. 21. The method of claim 21, wherein the one or more mutations comprises 1151T- ins, L1152R/P, C1156Y, I1171T/N/S, F1174L/C/V, V1180L, L1196M/F, L1198P, G1202R/del, D1203N, S1206Y, E1210K, or G1269A, or a combinations of any of these. 22. The method of claim 18, wherein the one or more targets comprises a coiled- coil domain. 23. The method of claim 18, wherein the specific target site comprises the coiled- coil domain. 24. The method of claim 18, wherein the one or more targets comprises one or more cysteines. 25. The method of claim 18, wherein the at least two reactive sites comprises at least two cysteines. 26. The method of claim 18, wherein the reactive site comprises the cysteine. 27. The method of claim 18, wherein the one or more targets is present within a cell, a culture, a tissue sample, a lysate, or a test sample. 28. The method of claim 18, wherein the method thereby inhibits the one or more targets. 29. The method of claim 18, wherein the method thereby inhibits signaling of the one or more targets. 30. The method of claim 29, wherein the signaling comprises signaling of kinase activity. 31. The method of claim 18, wherein the chemical compound further comprises an E3 ubiquitin ligase (E3) ligand. 32. The method of claim 31, wherein the E3 ligand is a ligand for Skp1–Cullin–F box complex (SCFβ−TrCP), von Hippel-Lindau (VHL), murine double minute 2 (MDM2), an inhibitor of apoptosis proteins (IAP), or cereblon (CRBN). 33. The method of claim 31, wherein the E3 ligand comprises a thalidomide-based ligand, a pomalidomide-based ligand, a 4-hydroxythalidomide-based ligand, a lenalidomide- based ligand, a VH032-based ligand, a VHL ligand 1 (VHL A1)-based ligand, a nutlin-3- based ligand, an idasanutlin-based ligand, a bestatin-based ligand, a methyl bestatin-based ligand, or a LCL-161-based ligand. 34. The method of any one of claims 3-5, wherein the specificity group, SG, and/or SG’, if present, comprises an aromatic group. 35. The method of claim 34, wherein the aromatic group comprises an optionally substituted aryl, optionally substituted phenyl, optionally substituted benzyl, optionally substituted biphenyl, optionally substituted naphthyl, optionally substituted pyrenyl, optionally substituted indenyl, optionally substituted fluorenyl, optionally substituted phenalenyl, optionally substituted phenanthryl, optionally substituted anthryl, optionally substituted triphenylenyl, optionally substituted tetracenyl, optionally substituted acenaphthenyl, optionally substituted carbazolyl (dibenzopyrrolyl), optionally substituted dibenzofuranyl, optionally substituted quinolinyl, optionally substituted isoquinolinyl, optionally substituted indolyl, optionally substituted benzimidazolyl, or optionally substituted thiazolyl. 36. The method of any one of claims 3-5, wherein the specificity group, SG, and/or SG’, if present, independently comprises optionally substituted phenyl, optionally substituted benzyl, or optionally substituted pyrenyl. 37. The method of any one of claims 3-5, wherein the specificity group, the scaffold, SG, SG’, and/or S, if present, is independently substituted with one or more of the following groups: halo, hydroxyl, nitro, optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted hydroxyalkyl, optionally substituted alkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, optionally substituted alkanoyloxy, optionally substituted aromatic, optionally substituted aryl, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heteroaromatic, optionally substituted heterocyclyl, optionally substituted heteroaryl, or optionally substituted amino. 38. The method of any one of claims 3-5, wherein the scaffold or S, if present, comprises a monovalent, bivalent, trivalent, tetravalent, or pentavalent linker. 39. The method of claim 38, wherein the linker comprises a covalent bond, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group. 40. The method of any one of claims 3-5, wherein the reactive moiety, the at least two reactive moieties, RM1, and/or RM2, if present, independently comprises an electrophilic group or a leaving group. 41. The method of claim 40, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 42. The method of any one of claims 1-5, wherein the chemical compound comprises a structure having any one of the following formulas: , y acceptable salt thereof; wherein: each of A1, A2, Ar1, and Ar2, comprises, independently, one or more aromatic groups; each of L, L1, L1a, L1b, L1c, L2, L2a, and L2b comprises, independently, a linker; each of R1, R2, R3, R4, R5, R6, and RL is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R7, R8, R8a, and R8b is, independently, H, optionally substituted C1-12 aliphatic, optionally substituted C1-12 heteroaliphatic, optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; x is an integer of 0-4; each of y, ya, and yb is, independently, an integer of 0-5; and z is an integer of 0-4. 43. The method of claim 42, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature. 44. The method of claim 42, wherein the optionally substituted C1-12 aliphatic is optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted hydroxyalkyl, optionally substituted alkenyl, or optionally substituted alkynyl. 45. The method of claim 42, wherein the optionally substituted C1-12 heteroaliphatic is optionally substituted alkoxy, optionally substituted haloalkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, or optionally substituted alkanoyloxy. 46. The method of claim 42, wherein the optionally substituted aromatic is optionally substituted aryl or optionally substituted heteroaryl. 47. The method of claim 42, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 48. The method of any one of claims 1-5, wherein the chemical compound comprises a structure having Formula (III): pharmaceutically acceptable salt thereof; wherein: L1 comprises a linker; each of R1, R2, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R8 is, independently, H, optionally substituted aliphatic, optionally substituted heteroaliphatic, optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; and y is an integer of 1-5. 49. The method of claim 48, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature. 50. The method of claim 48, wherein the optionally substituted C1-12 aliphatic is optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted hydroxyalkyl, optionally substituted alkenyl, or optionally substituted alkynyl. 51. The method of claim 48, wherein the optionally substituted C1-12 heteroaliphatic is optionally substituted alkoxy, optionally substituted haloalkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, or optionally substituted alkanoyloxy. 52. The method of claim 48, wherein the optionally substituted aromatic is optionally substituted aryl or optionally substituted heteroaryl. 53. The method of claim 48, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 54. The method of any one of claims 1-5, wherein the chemical compound comprises a structure having Formula (IV) or (V): y acceptable salt thereof; wherein: L1 comprises a linker; each of R1a, R1b, R2, R2a, R2b, R2c, R2d, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic, or wherein R1a and R1b, when taken together, forms an oxo, or wherein R2a and R2b, when taken together, forms an oxo; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R8 is, independently, H, optionally substituted, optionally substituted heteroaliphatic, optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; and y is an integer of 1-5. 55. The method of claim 54, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature. 56. The method of claim 54, wherein the optionally substituted C1-12 aliphatic is optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted hydroxyalkyl, optionally substituted alkenyl, or optionally substituted alkynyl. 57. The method of claim 54, wherein the optionally substituted C1-12 heteroaliphatic is optionally substituted alkoxy, optionally substituted haloalkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, or optionally substituted alkanoyloxy. 58. The method of claim 54, wherein the optionally substituted aromatic is optionally substituted aryl or optionally substituted heteroaryl. 59. The method of claim 54, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 60. The method of any one of claims 1-5, wherein the chemical compound is selected from the group consisting of SH001, SH002, SH003, SH004, SH005, SH006, SH007, SH008, SH009, SH010, SH011, SH012, SH013, SH014, SH015, SH016, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH024, SH025, SH026, SH027, SH028, SH029, SH030, SH031, SH032, SH033, SH034, SH035, SH036, SH037, SH038, SH039, SH040, SH041, SH042, SH043, SH044, SH045, SH046, SH047, SH048, SH049, SH050, SH051, SH052, SH053, or a pharmaceutically acceptable salt thereof. 61. The method of any one of claims 1-5, wherein the chemical compound is selected from the group consisting of SH002, SH003, SH004, SH005, SH006, SH009, SH012, SH013, SH014, SH015, SH016, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH028, SH031, SH032, SH034, SH036, SH037, SH038, SH039, SH040, SH043, or a pharmaceutically acceptable salt thereof. 62. The method of any one of claims 1-5, wherein the chemical compound is selected from the group consisting of SH002, SH003, SH004, SH005, SH013, SH014, SH015, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH028, SH031, SH032, SH034, SH036, SH037, or a pharmaceutically acceptable salt thereof. 63. The method of any one of claims 1-5, wherein the chemical compound is selected from the group consisting of SH013, SH031, SH038, SH039, SH043, or a pharmaceutically acceptable salt thereof. 64. A chemical compound comprising a structure having Formula (II): pharmaceutically acceptable salt thereof; wherein: S comprises a scaffold; each SG comprises, independently, a specificity group configured to interact with a respective specific target site of one or more targets; each of R1, R2, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; and n is an integer of 1 or more, and wherein the compound is not 2-chloro-N-[[(2-chloroacetyl)amino]-(3- methoxy-4-phenylmethoxyphenyl)methyl]acetamide. 65. The chemical compound of claim 64, wherein S comprises a trivalent or a tetravalent linker. 66. The chemical compound of claim 64, wherein SG comprises one or more aromatic groups. 67. The chemical compound of claim 64, wherein S and SG, when taken together, is not phenyl that is substituted with both methoxy in the meta-position and phenylmethoxy in the para position. 68. The chemical compound of claim 64, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 69. A chemical compound comprising a structure having Formula (II): pharmaceutically acceptable salt thereof; wherein: S comprises a scaffold; each SG comprises, independently, a specificity group configured to interact with a respective specific target site of one or more targets; each of R1, R2, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; and n is an integer of 1 or more, and wherein at least one of S, SG, R1, R2, R3, R4, R5, or R6 comprises an E3 ubiquitin ligase (E3) ligand. 70. The chemical compound of claim 69, wherein S comprises a trivalent or a tetravalent linker. 71. The chemical compound of claim 69, wherein SG comprises one or more aromatic groups. 72. The chemical compound of claim 69, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 73. The chemical compound of claim 69, further comprising a linker disposed between at least one of the S, SG, R1, R2, R3, R4, R5, or R6 and the E3 ligand. 74. The chemical compound of claim 64 or 69, wherein the chemical compound comprises a structure having Formula (IIa): pharmaceutically acceptable salt thereof; wherein: S comprises a scaffold; each of SG and SG’ comprises, independently, a specificity group configured to interact with a respective specific target site of the one or more targets; each L comprises, independently, a linker; each M comprises, independently, a ligand; each of R1, R2, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; and n1 is an integer of 0, 1, or 2; n2 is an integer of 0, 1, or 2; and n1 + n2 is greater than or equal to 1. 75. The chemical compound of claim 74, wherein the linker comprises a covalent bond, oxy, carbonyl, imino, nitrilo, an atom, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroalkylene group, an optionally substituted arylene group, or an optionally substituted heteroarylene group, which can further optionally include a click chemistry signature. 76. The chemical compound of claim 74, wherein the ligand comprises a binding ligand or a targeting ligand. 77. The chemical compound of claim 74, wherein the ligand comprises an E3 ubiquitin ligase (E3) ligand. 78. The chemical compound of claim 64, 69, or 74, wherein the specificity group, SG, and/or SG’, if present, comprises an aromatic group. 79. The chemical compound of claim 78, wherein the aromatic group comprises an optionally substituted aryl, optionally substituted phenyl, optionally substituted benzyl, optionally substituted biphenyl, optionally substituted naphthyl, optionally substituted pyrenyl, optionally substituted indenyl, optionally substituted fluorenyl, optionally substituted phenalenyl, optionally substituted phenanthryl, optionally substituted anthryl, optionally substituted triphenylenyl, optionally substituted tetracenyl, optionally substituted acenaphthenyl, optionally substituted carbazolyl (dibenzopyrrolyl), optionally substituted dibenzofuranyl, optionally substituted quinolinyl, optionally substituted isoquinolinyl, optionally substituted indolyl, optionally substituted benzimidazolyl, or optionally substituted thiazolyl. 80. The chemical compound of claim 64, 69, or 74, wherein the specificity group, SG, and/or SG’, if present, independently comprises optionally substituted phenyl, optionally substituted benzyl, or optionally substituted pyrenyl. 81. The chemical compound of claim 64, 69, or 74, wherein the specificity group, the scaffold, SG, SG’, and/or S, if present, is independently substituted with one or more of the following groups: halo, hydroxyl, nitro, optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted hydroxyalkyl, optionally substituted alkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, optionally substituted alkanoyloxy, optionally substituted aromatic, optionally substituted aryl, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heteroaromatic, optionally substituted heterocyclyl, optionally substituted heteroaryl, or optionally substituted amino. 82. The chemical compound of claim 64, 69, or 74, wherein the scaffold or S, if present, comprises a monovalent, bivalent, trivalent, tetravalent, or pentavalent linker. 83. The chemical compound of claim 82, wherein the linker comprises a covalent bond, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group. 84. The chemical compound of claim 64, 69, or 74, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 85. The chemical compound of claim 64 or 69, wherein the chemical compound comprises a structure having any one of the following formulas: , acceptable salt thereof; wherein: each of A1, A2, Ar1, and Ar2, comprises, independently, one or more aromatic groups; each of L, L1, L1a, L1b, L1c, L2, L2a, and L2b comprises, independently, a linker; each of R1, R2, R3, R4, R5, R6, and RL is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R7, R8, R8a, and R8b is, independently, H, optionally substituted C1-12 aliphatic, optionally substituted C1-12 heteroaliphatic, optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; x is an integer of 0-4; each of y, ya, and yb is, independently, an integer of 0-5; and z is an integer of 0-4. 86. The chemical compound of claim 85, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature. 87. The chemical compound of claim 85, wherein the optionally substituted C1-12 aliphatic is optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted hydroxyalkyl, optionally substituted alkenyl, or optionally substituted alkynyl. 88. The chemical compound of claim 85, wherein the optionally substituted C1-12 heteroaliphatic is optionally substituted alkoxy, optionally substituted haloalkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, or optionally substituted alkanoyloxy. 89. The chemical compound of claim 85, wherein the optionally substituted aromatic is optionally substituted aryl or optionally substituted heteroaryl. 90. The chemical compound of claim 85, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 91. The chemical compound of claim 64 or 69, wherein the chemical compound comprises a structure having Formula (III): (III) or a pharmaceutically acceptable salt thereof; wherein: L1 comprises a linker; each of R1, R2, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R8 is, independently, H, optionally substituted aliphatic, optionally substituted heteroaliphatic, optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; and y is an integer of 1-5. 92. The chemical compound of claim 91, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature. 93. The chemical compound of claim 91, wherein the optionally substituted C1-12 aliphatic is optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted hydroxyalkyl, optionally substituted alkenyl, or optionally substituted alkynyl. 94. The chemical compound of claim 91, wherein the optionally substituted C1-12 heteroaliphatic is optionally substituted alkoxy, optionally substituted haloalkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, or optionally substituted alkanoyloxy. 95. The chemical compound of claim 91, wherein the optionally substituted aromatic is optionally substituted aryl or optionally substituted heteroaryl. 96. The chemical compound of claim 91, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 97. The chemical compound of claim 64 or 69, wherein the chemical compound comprises a structure having Formula (IV) or (V): y acceptable salt thereof; wherein: L1 comprises a linker; each of R1a, R1b, R2, R2a, R2b, R2c, R2d, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic, or wherein R1a and R1b, when taken together, forms an oxo, or wherein R2a and R2b, when taken together, forms an oxo; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R8 is, independently, H, optionally substituted, optionally substituted heteroaliphatic, optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; and y is an integer of 1-5. 98. The chemical compound of claim 97, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature. 99. The chemical compound of claim 97, wherein the optionally substituted C1-12 aliphatic is optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted hydroxyalkyl, optionally substituted alkenyl, or optionally substituted alkynyl. 100. The chemical compound of claim 97, wherein the optionally substituted C1-12 heteroaliphatic is optionally substituted alkoxy, optionally substituted haloalkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, or optionally substituted alkanoyloxy. 101. The chemical compound of claim 97, wherein the optionally substituted aromatic is optionally substituted aryl or optionally substituted heteroaryl. 102. The chemical compound of claim 97, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 103. The chemical compound of claim 64 or 69, wherein the chemical compound is selected from the group consisting of SH001, SH002, SH003, SH004, SH005, SH006, SH007, SH008, SH009, SH010, SH011, SH012, SH013, SH014, SH015, SH016, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH024, SH025, SH026, SH027, SH028, SH029, SH030, SH031, SH032, SH033, SH034, SH035, SH036, SH037, SH038, SH039, SH040, SH041, SH042, SH043, SH044, SH045, SH046, SH047, SH048, SH049, SH050, SH051, SH052, SH053, or a pharmaceutically acceptable salt thereof. 104. The chemical compound of claim 64 or 69, wherein the chemical compound is selected from the group consisting of SH002, SH003, SH004, SH005, SH006, SH009, SH012, SH013, SH014, SH015, SH016, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH028, SH031, SH032, SH034, SH036, SH037, SH038, SH039, SH040, SH043, or a pharmaceutically acceptable salt thereof. 105. The chemical compound of claim 64 or 69, wherein the chemical compound is selected from the group consisting of SH002, SH003, SH004, SH005, SH013, SH014, SH015, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH028, SH031, SH032, SH034, SH036, SH037, or a pharmaceutically acceptable salt thereof. 106. The chemical compound of claim 64 or 69, wherein the chemical compound is selected from the group consisting of SH013, SH031, SH038, SH039, SH043, or a pharmaceutically acceptable salt thereof. 107. A pharmaceutical composition comprising the chemical compound of any one of claims 64-106 and a pharmaceutically acceptable excipient. 108. The pharmaceutical composition of claim 107, wherein the chemical compound is present in a therapeutically effective amount for a unit dosage form. 109. The pharmaceutical composition of claim 108, wherein the unit dosage form comprises an oral dosage form, a topical dosage form, or an intravenous dosage form. 110. A library comprising a plurality of test compounds, wherein at least one of the plurality of test compounds comprises a structure having Formula (II): pharmaceutically acceptable salt thereof; wherein: S comprises a scaffold; each SG comprises, independently, a specificity group configured to interact with a respective specific target site of one or more targets; each of R1, R2, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; and n is an integer of 1 or more, and wherein the compound is not 2-chloro-N-[[(2-chloroacetyl)amino]-(3- methoxy-4-phenylmethoxyphenyl)methyl]acetamide; and optionally wherein at least one of S, SG, R1, R2, R3, R4, R5, or R6 comprises an E3 ubiquitin ligase (E3) ligand. 111. The library of claim 110, wherein at least one of the plurality of test compounds comprises a structure having Formula (IIa). 112. The library of claim 110, wherein the one or more targets comprises a protein, a peptide, a fusion protein, or a constitutively active receptor protein. 113. The library of claim 110, wherein the one or more targets is, independently, selected from EML4-ALK, EML4, EML4 fusion protein, ALK fusion protein, PSME1, PSME2, TMX1, TXN, TJP2, PDIA6, P4HB, AGR2, PDIA3, PDIA4, PPFIA1, SMARCC2, GCLC, NPEPPS, PDCD61P, PRDXl, ERO1A, PCBP1, CTTN, PRDX2, PRDX3, RARS1, TXNDC17, RPL21, S100A2, KIF5B, or RPL18. 114. The library of claim 110, wherein the one or more targets comprises an ALK fusion protein having one or more mutations. 115. The library of claim 114, wherein the one or more mutations comprises 1151T- ins, L1152R/P, C1156Y, I1171T/N/S, F1174L/C/V, V1180L, L1196M/F, L1198P, G1202R/del, D1203N, S1206Y, E1210K, or G1269A, or a combinations of any of these. 116. The library of claim 110, wherein the one or more targets comprises a coiled- coil domain. 117. The library of claim 110, wherein the specific target site comprises the coiled- coil domain. 118. The library of claim 110, wherein the one or more targets comprises one or more cysteines. 119. The library of claim 110, wherein the at least two reactive sites comprises at least two cysteines. 120. The library of claim 110, wherein the reactive site comprises the cysteine. 121. The library of claim 110, wherein the one or more targets is present within a cell, a culture, a tissue sample, a lysate, a sample, and the like. 122. The library of claim 110, wherein the test compound thereby inhibits the one or more targets. 123. The library of claim 110, wherein the test compound thereby inhibits signaling of the one or more targets. 124. The library of claim 123, wherein the signaling comprises signaling of kinase activity. 125. The library of claim 110, wherein the chemical compound or the test compound further comprises an E3 ubiquitin ligase (E3) ligand. 126. The library of claim 125, wherein the E3 ligand is a ligand for Skp1–Cullin–F box complex (SCFβ−TrCP), von Hippel-Lindau (VHL), murine double minute 2 (MDM2), an inhibitor of apoptosis proteins (IAP), or cereblon (CRBN). 127. The library of claim 125, wherein the E3 ligand comprises a thalidomide-based ligand, a pomalidomide-based ligand, a 4-hydroxythalidomide-based ligand, a lenalidomide- based ligand, a VH032-based ligand, a VHL ligand 1 (VHL Al)-based ligand, a nutlin-3-based ligand, an idasanutlin-based ligand, a bestatin-based ligand, a methyl bestatin-based ligand, or a LCL-161-based ligand. 128. The library of claim 110, wherein the specificity group, SG, and/or SG’, if present, comprises an aromatic group. 129. The library of claim 128, wherein the aromatic group comprises an optionally substituted aryl, optionally substituted phenyl, optionally substituted benzyl, optionally substituted biphenyl, optionally substituted naphthyl, optionally substituted pyrenyl, optionally substituted indenyl, optionally substituted fluorenyl, optionally substituted phenalenyl, optionally substituted phenanthryl, optionally substituted anthryl, optionally substituted triphenylenyl, optionally substituted tetracenyl, optionally substituted acenaphthenyl, optionally substituted carbazolyl (dibenzopyrrolyl), optionally substituted dibenzofuranyl, optionally substituted quinolinyl, optionally substituted isoquinolinyl, optionally substituted indolyl, optionally substituted benzimidazolyl, or optionally substituted thiazolyl. 130. The library of claim 110, wherein the specificity group, SG, and/or SG’, if present, independently comprises optionally substituted phenyl, optionally substituted benzyl, or optionally substituted pyrenyl. 131. The library of claim 110, wherein the specificity group, the scaffold, SG, SG’, and/or S, if present, is independently substituted with one or more of the following groups: halo, hydroxyl, nitro, optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted hydroxyalkyl, optionally substituted alkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, optionally substituted alkanoyloxy, optionally substituted aromatic, optionally substituted aryl, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heteroaromatic, optionally substituted heterocyclyl, optionally substituted heteroaryl, or optionally substituted amino. 132. The library of claim 110, wherein the scaffold or S, if present, comprises a monovalent, bivalent, trivalent, tetravalent, or pentavalent linker. 133. The library of claim 132, wherein the linker comprises a covalent bond, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group. 134. The library of claim 110, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 135. The library of claim 110, wherein the test compound comprises a structure having any one of the following formulas: , acceptable salt thereof; wherein: each of A1, A2, Ar1, and Ar2, comprises, independently, one or more aromatic groups; each of L, L1, L1a, L1b, L1c, L2, L2a, and L2b comprises, independently, a linker; each of R1, R2, R3, R4, R5, R6, and RL is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R7, R8, R8a, and R8b is, independently, H, optionally substituted C1-12 aliphatic, optionally substituted C1-12 heteroaliphatic, optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; x is an integer of 0-4; each of y, ya, and yb is, independently, an integer of 0-5; and z is an integer of 0-4. 136. The library of claim 135, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature. 137. The library of claim 135, wherein the optionally substituted C1-12 aliphatic is optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted hydroxyalkyl, optionally substituted alkenyl, or optionally substituted alkynyl. 138. The library of claim 135, wherein the optionally substituted C1-12 heteroaliphatic is optionally substituted alkoxy, optionally substituted haloalkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, or optionally substituted alkanoyloxy. 139. The library of claim 135, wherein the optionally substituted aromatic is optionally substituted aryl or optionally substituted heteroaryl. 140. The library of claim 135, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 141. The library of claim 110, wherein the test compound comprises a structure having Formula (III): pharmaceutically acceptable salt thereof; wherein: L1 comprises a linker; each of R1, R2, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R8 is, independently, H, optionally substituted aliphatic, optionally substituted heteroaliphatic, optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; and y is an integer of 1-5. 142. The library of claim 141, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature. 143. The library of claim 141, wherein the optionally substituted C1-12 aliphatic is optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted hydroxyalkyl, optionally substituted alkenyl, or optionally substituted alkynyl. 144. The library of claim 141, wherein the optionally substituted C1-12 heteroaliphatic is optionally substituted alkoxy, optionally substituted haloalkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, or optionally substituted alkanoyloxy. 145. The library of claim 141, wherein the optionally substituted aromatic is optionally substituted aryl or optionally substituted heteroaryl. 146. The library of claim 141, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 147. The library of claim 110, wherein the test compound comprises a structure having Formula (IV) or (V): pharmaceutically acceptable salt thereof; wherein: L1 comprises a linker; each of R1a, R1b, R2, R2a, R2b, R2c, R2d, R3, R4, R5, and R6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic, or wherein R1a and R1b, when taken together, forms an oxo, or wherein R2a and R2b, when taken together, forms an oxo; each of X1 and X2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X1 and R3, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X1 and R3 and R4, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X2 and R5, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X2 and R5 and R6, when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R8 is, independently, H, optionally substituted, optionally substituted heteroaliphatic, optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; and y is an integer of 1-5. 148. The library of claim 147, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature. 149. The library of claim 147, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl wherein the optionally substituted C1-12 aliphatic is optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted hydroxyalkyl, optionally substituted alkenyl, or optionally substituted alkynyl. 150. The library of claim 147, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl wherein the optionally substituted C1-12 heteroaliphatic is optionally substituted alkoxy, optionally substituted haloalkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, or optionally substituted alkanoyloxy. 151. The library of claim 147, wherein the linker comprises a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl wherein the optionally substituted aromatic is optionally substituted aryl or optionally substituted heteroaryl. 152. The library of claim 147, wherein the electrophilic group or the leaving group comprises optionally substituted haloacetyl, optionally substituted haloacetylamido, optionally substituted acryloyl, optionally substituted acrylamido, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl, halo, cyano, isocyanato, isothiocyanato, optionally substituted alkenylsulfonyl, halosulfonyl, optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, or thiol. 153. The library of claim 110, wherein the chemical compound is selected from the group consisting of SH001, SH002, SH003, SH004, SH005, SH006, SH007, SH008, SH009, SH010, SH011, SH012, SH013, SH014, SH015, SH016, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH024, SH025, SH026, SH027, SH028, SH029, SH030, SH031, SH032, SH033, SH034, SH035, SH036, SH037, SH038, SH039, SH040, SH041, SH042, SH043, SH044, SH045, SH046, SH047, SH048, SH049, SH050, SH051, SH052, SH053, or a pharmaceutically acceptable salt thereof. 154. The library of claim 110, wherein the chemical compound is selected from the group consisting of SH002, SH003, SH004, SH005, SH006, SH009, SH012, SH013, SH014, SH015, SH016, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH028, SH031, SH032, SH034, SH036, SH037, SH038, SH039, SH040, SH043, or a pharmaceutically acceptable salt thereof. 155. The library of claim 110, wherein the chemical compound is selected from the group consisting of SH002, SH003, SH004, SH005, SH013, SH014, SH015, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH028, SH031, SH032, SH034, SH036, SH037, or a pharmaceutically acceptable salt thereof. 156. The library of claim 110, wherein the chemical compound is selected from the group consisting of SH013, SH031, SH038, SH039, SH043, or a pharmaceutically acceptable salt thereof. |
, acceptable salt thereof; wherein: each of A1, A2, Ar 1 , and Ar 2 , includes, independently, one or more aromatic groups (e.g., any described herein, including one or more heteroaromatic groups); each of L, L1, L1a, L1b, L1c, L2, L2a, and L2b includes, independently, a linker (e.g., a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature, as well as any described herein); each of R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , and R L is, independently, H, halo, optionally substituted C 1-12 aliphatic, or optionally substituted C 1-12 heteroaliphatic; each of X 1 and X 2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X 1 and R 3 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X 1 and R 3 and R 4 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X 2 and R 5 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X 2 and R 5 and R 6 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R 7 , R 8 , R 8a , and R 8b is, independently, H, optionally substituted C 1-12 aliphatic (e.g., alkyl, cycloalkyl, haloalkyl, hydroxyalkyl, alkenyl, alkynyl), optionally substituted C1-12 heteroaliphatic (e.g., alkoxy, haloalkoxy, alkenyloxy, alkynyloxy, alkanoyl, alkanoyloxy), optionally substituted aromatic (e.g., aryl, heteroaryl), optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; x is an integer of 0-4 (e.g., an integer of 1-4); each of y, ya, and yb is, independently, an integer of 0-5 (e.g., an integer of 1-5); and z is an integer of 0-4 (e.g., an integer of 1-4). [0166] In some embodiments, x is an integer greater than 0. In some embodiments, at least one of y, ya, and yb is an integer greater than 0. In some embodiments, z is an integer greater than 0. [0167] In some embodiments, the compound includes a structure having any one of the f wherein: each of L1 and L2 includes, independently, a linker (e.g., a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature, as well as any described herein); each of R 1 , R 2 , R 3 , R 4 , R 4a , R 4b , R 5 , R 6 , R 6a , and R 6b is, independently, H, halo, optionally substituted C 1-12 aliphatic, or optionally substituted C 1-12 heteroaliphatic; each of X 1 and X 2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X 1 and R 3 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X 1 and R 3 and R 4 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X 2 and R 5 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X 2 and R 5 and R 6 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R 7 and R 8 is, independently, H, optionally substituted C 1-12 aliphatic (e.g., alkyl, cycloalkyl, haloalkyl, hydroxyalkyl, alkenyl, alkynyl), optionally substituted C1-12 heteroaliphatic (e.g., alkoxy, haloalkoxy, alkenyloxy, alkynyloxy, alkanoyl, alkanoyloxy), optionally substituted aromatic (e.g., aryl, heteroaryl), optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; each of w1 and w2 is, independently, an integer of 0-2; x is an integer of 0-4 (e.g., an integer of 1-4); each of y, ya, and yb is, independently, an integer of 0-5 (e.g., an integer of 1-5); and z is an integer of 0-4 (e.g., an integer of 1-4). [0168] In some embodiments, at least one of w1 and w2 is an integer greater than 0. In some embodiments, w1 and w2 are both 0, or at least one of w1 and w2 is 0. In some embodiments, x is an integer greater than 0. In some embodiments, at least one of y, ya, and yb is an integer greater than 0. In some embodiments, z is an integer greater than 0. [0169] In some embodiments, the compound includes a structure having Formula (III): pharmaceutically acceptable salt thereof; wherein: L1 includes a linker (e.g., a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature, as well as any described herein); each of R 1 , R 2 , R 3 , R 4 , R 5 , and R 6 is, independently, H, halo, optionally substituted C 1- 12 aliphatic, or optionally substituted C1-12 heteroaliphatic; each of X 1 and X 2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X 1 and R 3 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X 1 and R 3 and R 4 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X 2 and R 5 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X 2 and R 5 and R 6 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R 8 is, independently, H, optionally substituted aliphatic (e.g., alkyl, cycloalkyl, haloalkyl, hydroxyalkyl, alkenyl, alkynyl), optionally substituted heteroaliphatic (e.g., alkoxy, haloalkoxy, alkenyloxy, alkynyloxy, alkanoyl, alkanoyloxy), optionally substituted aromatic (e.g., aryl, heteroaryl), optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; and y is an integer of 1-5. [0170] In some embodiments, the compound includes a structure having Formula (IV) or (V): y acceptable salt thereof; wherein: L1 includes a linker (e.g., a covalent bond, a bivalent linker, a trivalent linker, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, which can further optionally include a click chemistry signature, as well as any described herein); each of R 1a , R 1b , R 2 , R 2a , R 2b , R 2c , R 2d , R 3 , R 4 , R 5 , and R 6 is, independently, H, halo, optionally substituted C1-12 aliphatic, or optionally substituted C1-12 heteroaliphatic, or wherein R 1a and R 1b , when taken together, forms an oxo (e.g., =O), or wherein R 2a and R 2b , when taken together, forms an oxo (e.g., =O); each of X 1 and X 2 is, independently, halo, a leaving group, or an electrophilic group, or wherein X 1 and R 3 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X 1 and R 3 and R 4 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group, or wherein X 2 and R 5 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkenyl group, or wherein X 2 and R 5 and R 6 , when taken together with the carbon atom to which each are attached, forms an optionally substituted alkynyl group; each of R 8 is, independently, H, optionally substituted aliphatic (e.g., alkyl, cycloalkyl, haloalkyl, hydroxyalkyl, alkenyl, alkynyl), optionally substituted heteroaliphatic (e.g., alkoxy, haloalkoxy, alkenyloxy, alkynyloxy, alkanoyl, alkanoyloxy), optionally substituted aromatic (e.g., aryl, heteroaryl), optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, halo, hydroxyl, amino, nitro, or cyano; and y is an integer of 1-5. [0171] In any embodiment herein, the compound (e.g., any herein, such as a compound of having any one of Formulas (I), (Ia), (II), (IIa), (III), (IV), (V), and (1)-(25)) includes a linker (e.g., any described herein) disposed between at least one of the S, SG, R 1 , R 2 , R 3 , R 4 , R 5 , or R 6 and the E3 ligand. [0172] In any embodiment herein, the specificity group, SG, and/or SG’, if present, includes an aromatic group (e.g., which can also include a heteroaromatic group). [0173] In any embodiment herein, the aromatic group includes an optionally substituted aryl, phenyl, benzyl, biphenyl, naphthyl, pyrenyl, indenyl, fluorenyl, phenalenyl, phenanthryl, anthryl, triphenylenyl, tetracenyl, acenaphthenyl, carbazolyl (dibenzopyrrolyl), dibenzofuranyl, quinolinyl, isoquinolinyl, indolyl, benzimidazolyl, thiazolyl, or the like. [0174] In any embodiment herein, the specificity group, SG, and/or SG’, if present, independently includes optionally substituted phenyl, optionally substituted benzyl, or optionally substituted pyrenyl. [0175] In any embodiment herein, the specificity group, the scaffold, SG, SG’, and/or S, if present, is independently substituted with one or more of the following groups: halo (e.g., ‒X), hydroxyl, nitro, optionally substituted alkyl (e.g., ‒Ak), optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted hydroxyalkyl, optionally substituted alkoxy (e.g., ‒O-Ak), optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl (e.g., ‒C(O)-Ak), optionally substituted alkanoyloxy (e.g., ‒O-C(O)-Ak), optionally substituted aromatic, optionally substituted aryl, optionally substituted aralkyl (e.g., ‒Ak-Ar), optionally substituted alkaryl (e.g., ‒Ar-Ak), optionally substituted aryloxy (e.g., ‒O-Ar), optionally substituted aralkoxy (e.g., ‒O-Ak-Ar), optionally substituted aralkanoyl (e.g., ‒C(O)-Ak-Ar), optionally substituted aralkanoyloxy (e.g., ‒O-C(O)-Ak-Ar), optionally substituted aryloyloxy (e.g., ‒O-C(O)-Ar), optionally substituted aryloxycarbonyl (e.g., ‒C(O)-O-Ar), optionally substituted aryloyl (e.g., ‒C(O)-Ar), optionally substituted heteroaromatic, optionally substituted heterocyclyl, optionally substituted heteroaryl, or optionally substituted amino. [0176] In any embodiment herein, the scaffold or S, if present, includes a monovalent, bivalent, trivalent, tetravalent, or pentavalent linker (e.g., a covalent bond, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted aliphatic group, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroaliphatic group, an optionally substituted heteroalkylene group, an optionally substituted aromatic group, an optionally substituted arylene group, an optionally substituted heteroarylene group, or an optionally substituted heterocyclic group, as well as any described herein). [0177] In any embodiment herein, the reactive moiety, the at least two reactive moieties, RM1, and/or RM2, if present, independently includes an electrophilic group or a leaving group. [0178] In any embodiment herein, the electrophilic group or the leaving group includes optionally substituted haloacetyl (e.g., ‒C(O)CH2X, where X is halo), optionally substituted haloacetylamido (e.g., ‒NRC(O)CH 2 X, where X is halo and wherein R is H or alkyl), optionally substituted acryloyl (e.g., ‒C(O)-CH=CH2), optionally substituted acrylamido (e.g., ‒NRC(O)-CH=CH 2 , where R is H or alkyl), optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted oxiranyl (epoxide radical), halo, cyano (‒CN), isocyanato (‒NCO), isothiocyanato (‒NCS), optionally substituted alkenylsulfonyl (e.g., ‒SO2-vinyl), halosulfonyl (e.g., ‒SO2-halo), optionally substituted maleimidyl, optionally substituted alkoxy, optionally substituted thioalkoxy, optionally substituted thioaryloxy, thiol, and the like. [0179] In any embodiment herein, the linker (e.g., linker L that may optionally be attached to M) includes –L A -L B -L C –, wherein: each of L A , L B , and L C includes, independently, a linker (e.g., a covalent bond, oxy, carbonyl, carbonyloxy, sulfo, an atom, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroalkylene group, an optionally substituted arylene group, or an optionally substituted heteroarylene group, which can further optionally include a click chemistry signature, as well as any described herein). [0180] In any embodiment herein, each of L A and L B is, independently, a covalent bond, oxy, carbonyl, carbonyloxy, imino, nitrilo, sulfo, an atom, an optionally substituted alkylene group, an optionally substituted alkyleneoxy group, an optionally substituted heteroalkylene group, an optionally substituted arylene group, or an optionally substituted heteroarylene group. [0181] In any embodiment herein, L C includes a click chemistry signature (e.g., an optionally substituted triazolyl). [0182] In any embodiment herein, one or more aromatic groups (e.g., one or more of A1, A2, Ar1, and Ar2) is substituted with one or more groups selected from optionally substituted aliphatic (e.g., alkyl, cycloalkyl, haloalkyl, hydroxyalkyl, alkenyl, alkynyl), optionally substituted heteroaliphatic (e.g., alkoxy, haloalkoxy, alkenyloxy, alkynyloxy, alkanoyl, alkanoyloxy), optionally substituted aromatic, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted heteroaromatic, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heterocyclyl, optionally substituted alkylsulfonyl, optionally substituted arylsulfonyl, halo, hydroxyl, nitro, or cyano. [0183] In any embodiment herein, each of R 1 , R 2 , R 3 , R 4 , R 4a , R 4b , R 5 , R 6 , R 6a , and R 6b is, independently, H, halo, haloalkyl, or alkyl. [0184] In any embodiment herein, each of R 1a , R 1b , R 2 , R 2a , R 2b , R 2c , R 2d , R 3 , R 4 , R 4a , R 4b , R 5 , R 6 , R 6a , and R 6b is, independently, H, halo, haloalkyl, or alkyl. [0185] In any embodiment herein, R 7 is H, halo, hydroxyl, nitro, cyano, optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted hydroxyalkyl, optionally substituted alkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, optionally substituted alkanoyloxy, optionally substituted aromatic, optionally substituted aryl, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heteroaromatic, optionally substituted heterocyclyl, optionally substituted heteroaryl, or optionally substituted amino. [0186] In any embodiment herein, R 7 is H, halo, hydroxyl, nitro, optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted alkoxy, optionally substituted alkenyloxy, or optionally substituted alkynyloxy. [0187] In any embodiment herein, at least one of R 7 and R 8 is not H. [0188] In any embodiment herein, each of R 7 , R 8 , R 8a , and R 8b is, independently, H, halo, hydroxyl, nitro, cyano, optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted hydroxyalkyl, optionally substituted alkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, optionally substituted alkanoyloxy, optionally substituted aromatic, optionally substituted aryl, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heteroaromatic, optionally substituted heterocyclyl, optionally substituted heteroaryl, or optionally substituted amino. [0189] In any embodiment herein, R 8 is not H. In some embodiments, R 8 is not halo. In some embodiments, R 8 is not alkyl. [0190] In any embodiment herein, R 8 , R 8a , and R 8b are not H. In some embodiments, R 8 , R 8a , and R 8b are not halo. In some embodiments, R 8 , R 8a , and R 8b are not alkyl. [0191] In any embodiment herein, R 8 , R 8a (if present), and R 8b (if present) is, independently, H, halo, hydroxyl, nitro, cyano, optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted hydroxyalkyl, optionally substituted alkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, optionally substituted alkanoyloxy, optionally substituted aromatic, optionally substituted aryl, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heteroaromatic, optionally substituted heterocyclyl, optionally substituted heteroaryl, or optionally substituted amino. [0192] In any embodiment herein, R 8 , R 8a (if present), and R 8b (if present) is, independently, H, halo, optionally substituted alkyl, optionally substituted cycloalkyl, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted alkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, optionally substituted alkanoyloxy, optionally substituted aromatic, optionally substituted aryl, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heteroaromatic, optionally substituted heterocyclyl, optionally substituted heteroaryl, or optionally substituted amino. [0193] In any embodiment herein, R 8 , R 8a (if present), and R 8b (if present) is, independently, halo, optionally substituted haloalkyl, optionally substituted haloalkoxy, optionally substituted alkoxy, optionally substituted alkenyloxy, optionally substituted alkynyloxy, optionally substituted alkanoyl, optionally substituted alkanoyloxy, optionally substituted aromatic, optionally substituted aryl, optionally substituted aralkyl, optionally substituted alkaryl, optionally substituted aryloxy, optionally substituted aralkoxy, optionally substituted aralkanoyl, optionally substituted aralkanoyloxy, optionally substituted aryloyloxy, optionally substituted aryloxycarbonyl, optionally substituted aryloyl, optionally substituted heteroaromatic, optionally substituted heterocyclyl, or optionally substituted heteroaryl. [0194] In any embodiment herein, the compound (e.g., within the scaffold or S) can include a linker, such as a monovalent, bivalent, trivalent, tetravalent, or pentavalent linker. Non-limiting examples of linkers can include any described herein. In some embodiments, the linker is a covalent bond, oxy (e.g., ‒O‒), carbonyl (e.g., ‒C(O)‒), carbonyloxy (e.g., ‒O- C(O)‒ or ‒C(O)-O‒), imino (e.g., –NR– or –N<), nitrilo (e.g., –N< or –N= or N≡), sulfo (e.g., –SO2–), an atom, optionally substituted aliphatic, optionally substituted alkylene, optionally substituted alkyleneoxy, optionally substituted heteroaliphatic, optionally substituted heteroalkylene, optionally substituted aromatic, optionally substituted arylene group, optionally substituted heteroarylene, or optionally substituted heterocyclic, as well as any described herein. [0195] Any of the compounds herein (alone or in combination) can be provided in a composition. In some embodiments, the composition is a pharmaceutical composition. In some embodiments, the pharmaceutical composition includes a chemical compound (e.g., any described herein) and a pharmaceutically acceptable excipient. In some embodiments, the chemical compound is present in a therapeutically effective amount for a unit dosage form. Non-limiting examples of unit dosage forms include an oral dosage form (e.g., a tablet, capsule, caplet, gelcap, or syrup), a topical dosage form (e.g., a cream, gel, lotion, or ointment), or an intravenous dosage form (e.g., as a sterile solution). [0196] Any of the compounds herein (alone or in combination) can be provided in a library. In some embodiments, the library can be encoded to provide the identity of the compound. The library can include a plurality of compounds (e.g., including one or more of any compounds herein) provided in any useful format (e.g., beads, wells, arrays, etc.). Methods [0197] The present document encompasses methods of using a compound (e.g., any described herein). [0198] A non-limiting method can include a method of targeting or engaging one or more targets with a chemical compound (e.g., any described herein). In some embodiments, the method includes: binding a specificity group (e.g., SG, such as any described herein) of the chemical compound to a specific target site, and reacting at least two reactive moieties (e.g., RM, such as RM1, RM2, or any described herein) of the chemical compound with respective reactive sites to form covalent bonds. [0199] In some embodiments, the one or more targets includes the specific target site and at least two reactive sites. For example and without limitation, the one or more targets can include a monomeric protein, a multimeric protein, a single protein, or a plurality of proteins. [0200] In some embodiments, the chemical compound includes a scaffold (e.g., S, such as any described herein) disposed between the specificity group and the at least two reactive moieties. [0201] A non-limiting method can include a method of targeting or engaging one or more targets with a chemical compound, the method including: providing a chemical compound (e.g., any described herein) to the one or more targets, and incubating the chemical compound with the one or more targets under conditions configured to bind the specificity group to the specific target site and to react the at least two reactive moieties with the respective reactive site to form covalent bonds. [0202] In some embodiments, the chemical compound includes: a specificity group (e.g., SG, such as any described herein) configured to interact with a specific target site of the one or more targets, and at least two (e.g., two, three, four, or more) reactive moieties (e.g., RM, such as RM1, RM2, or any described herein), wherein each of the at least two reactive moieties is configured to react with a respective reactive site of the one or more targets. [0203] A non-limiting method can include a method of targeting or engaging one or more targets with a chemical compound, the method including: providing an effective amount of the chemical compound, wherein the chemical compound includes a structure having any one of Formulas (I), (Ia), (II), (IIa), (III), (IV), (V), and (1)-(25), or a pharmaceutically acceptable salt thereof. In some embodiments, the chemical compound is one or more of SH001-SH053, or a pharmaceutically acceptable salt thereof. In some embodiments, the chemical compound is one or more of SH002, SH003, SH004, SH005, SH006, SH009, SH012, SH013, SH014, SH015, SH016, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH028, SH031, SH032, SH034, SH036, SH037, SH038, SH039, SH040, SH043, or a pharmaceutically acceptable salt thereof. [0204] A non-limiting method can include a method of identifying one or more targets, the method including: providing a chemical compound to a test sample, wherein the chemical compound includes a structure having any one of Formulas (I), (Ia), (II), (IIa), (III), (IV), (V), and (1)-(25), or a pharmaceutically acceptable salt thereof; and identifying a biological target bound to the chemical compound. In some embodiments, the chemical compound is one or more of SH001-SH053, or a pharmaceutically acceptable salt thereof. In some embodiments, the chemical compound is one or more of SH002, SH003, SH004, SH005, SH006, SH009, SH012, SH013, SH014, SH015, SH016, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH028, SH031, SH032, SH034, SH036, SH037, SH038, SH039, SH040, SH043, or a pharmaceutically acceptable salt thereof. [0205] A non-limiting method can include a method of treating a disease (e.g., cancer), the method including: administering a therapeutically effective amount of a chemical compound to a subject in need thereof, wherein the chemical compound includes a structure having any one of Formulas (I), (Ia), (II), (IIa), (III), (IV), (V), and (1)-(25), or a pharmaceutically acceptable salt thereof. In some embodiments, the chemical compound is one or more of SH001-SH053, or a pharmaceutically acceptable salt thereof. In some embodiments, the chemical compound is one or more of SH002, SH003, SH004, SH005, SH006, SH009, SH012, SH013, SH014, SH015, SH016, SH017, SH018, SH019, SH020, SH021, SH022, SH023, SH028, SH031, SH032, SH034, SH036, SH037, SH038, SH039, SH040, SH043, or a pharmaceutically acceptable salt thereof. [0206] In some embodiments, the disease is cancer. Non-limiting examples include non- small cell lung cancer (NSCLC), lung adenocarcinoma, lung cancer, breast cancer, and colorectal cancer. In some embodiments, the cancer is characterized by a presence of an EML4-ALK fusion gene, an EML4-ALK fusion protein, an EML4 fusion gene, an EML4 fusion protein, an ALK fusion gene, an ALK fusion protein, or a variant thereof. [0207] In some embodiments, the non-small cell lung cancer (NSCLC) is characterized by a presence of an EML4-ALK fusion gene, an EML4-ALK fusion protein, an EML4 fusion gene, an EML4 fusion protein, an ALK fusion gene, an ALK fusion protein, or a variant thereof. [0208] In some embodiments, the specificity group and/or the scaffold, if present, includes an E3 ubiquitin ligase (E3) ligand. In some embodiments, the compound (e.g., any described herein) includes a linker (e.g., any described herein) disposed between the specificity group and the E3 ligand and/or between the scaffold and the E3 ligand. Targets [0209] The present document relates to compounds and methods for binding, targeting, or otherwise interacting within any target. In some embodiments, the target includes a protein, a peptide, a fusion protein, or a constitutively active receptor protein. Non-limiting examples of targets include, e.g., EML4-ALK, EML4, EML4 fusion protein, ALK fusion protein, PSME1, PSME2, TMX1, TXN, TJP2, PDIA6, P4HB, AGR2, PDIA3, PDIA4, PPFIA1, SMARCC2, GCLC, NPEPPS, PDCD61P, PRDXl, ERO1A, PCBP1, CTTN, PRDX2, PRDX3, RARS1, TXNDC17, RPL21, S100A2, KIF5B, or RPL18. In some embodiments, the one or more targets includes an ALK fusion protein having one or more optional mutations (e.g., 1151T- ins, L1152R/P, C1156Y, I1171T/N/S, F1174L/C/V, V1180L, L1196M/F, L1198P, G1202R/del, D1203N, S1206Y, E1210K, and/or G1269A, including combinations of any of these, such as L1196M/G1202R). [0210] Targets can also be characterized by the presence of certain structural domains or interactions. In some embodiments, the one or more targets includes a coiled-coil domain. In some embodiments, the specific target site includes the coiled-coil domain. [0211] Targets can also be characterized by the presence of certain functional groups (e.g., amino acids). In some embodiments, the one or more targets includes one or more cysteines. In some embodiments, at least two reactive sites includes at least two cysteines. In some embodiments, the reactive site includes the cysteine. [0212] Targets can be present, e.g., within a cell, a culture, a tissue sample, a lysate, a sample, and the like. [0213] In some embodiments, the method, the chemical compound, or the test compound inhibits the one or more targets. In some embodiments, the method, the chemical compound, or the test compound inhibits signaling of the one or more target (e.g., wherein the signaling includes signaling of kinase activity). Ligands [0214] Any of the compounds herein can include a ligand. In some embodiments, the ligand can engage, bind, or otherwise interact with an E3 ubiquitin ligase. In turn, such a ligand can be an E3 ligand. In some embodiments, the E3 ligand is a ligand for Skp1–Cullin–F box complex (SCF β−TrCP ), von Hippel-Lindau (VHL), murine double minute 2 (MDM2), an inhibitor of apoptosis proteins (IAP, e.g., cIAP1, cIAP2, XIAP, or ML-IAP), or cereblon (CRBN). [0215] Non-limiting examples of ligands include, e.g., a thalidomide-based ligand, a pomalidomide-based ligand, a 4-hydroxythalidomide-based ligand, a lenalidomide-based ligand, a VH032-based ligand, a VHL ligand 1 (VHL Al)-based ligand, a nutlin-3-based ligand, an idasanutlin-based ligand, a bestatin-based ligand, a methyl bestatin-based ligand, a LCL-161-based ligand, and the like. [0216] The ligand can be provided in any useful manner. In some embodiments, the ligand is a substitution for or attached to one or more of S, SG, SG’, A1, A2, Ar 1 , Ar 2 , R 7 , R 8 , R 8a , and R 8b . Linkers [0217] Linkers can be present between two components (e.g., between a click chemistry entity and a ligand, between a reactive group and ligand, etc.) or within a scaffold or S. Linkers can include a bond (e.g., a covalent bond); an optionally substituted alkylene; an optionally substituted heteroalkylene (e.g., poly(ethylene glycol), such as ‒(OCH 2 CH 2 ) n ‒, in which n is an integer of 1 to 100); an optionally substituted arylene; or an optionally substituted heteroarylene, as well as combinations thereof. [0218] An alkylene can include a multivalent (e.g., bivalent, trivalent, tetravalent, etc.) form of an alkyl group. Exemplary alkylene groups include methylene, ethylene, propylene, butylene, etc. In some embodiments, the alkylene group is a C1-3, C1-6, C1-12, C1-16, C1-18, C1-20, C 1-24 , C 2-3 , C 2-6 , C 2-12 , C 2-16 , C 2-18 , C 2-20 , or C 2-24 alkylene group. The alkylene group can be branched or unbranched. The alkylene group can also be substituted or unsubstituted. For example, the alkylene group can be substituted with one or more substitution groups (e.g., halo, oxy, oxo, amino, and the like). A heteroalkylene can be an alkylene group containing one, two, three, or four non-carbon heteroatoms (e.g., independently selected from the group consisting of nitrogen, oxygen, phosphorous, sulfur, or halo). [0219] The linker can include one or more chemical signatures. In one embodiment, the chemical signature includes a click-chemistry signature, which arises from reacting a click- chemistry reaction pair (e.g., any described herein). Non-limiting examples of click-chemistry signatures include a triazole, an unsaturated six-member ring, a covalent bond, and the like. [0220] In another embodiment, the chemical signature can include a reaction signature, which arises from reacting a cross-linker reaction pair. Non-limiting examples of cross-linker reaction pairs include those for forming a covalent bond between a carboxyl group (e.g., ‒CO 2 H) and an amino group (e.g., ‒NH 2 ); or between an imido group (e.g., maleimido or succinimido) and a thiol group (e.g., ‒SH); or between an epoxide group and a thiol group (e.g., ‒SH); or between an epoxide group and an amino group (e.g., ‒NH 2 ); or between an ester group (e.g., ‒CO2R, in which R is an organic moiety, such as optionally substituted alkyl, aryl, etc.) and an amino group (e.g., ‒NH 2 ); or between an carbamido group (e.g., ‒NHC(O)Het, where Het is a N-containing heterocyclyl) and an amino group (e.g., ‒NH2); or between a phospho group (e.g., ‒P(O)(OH) 2 ) and an amino group (e.g., ‒NH 2 ), such as 1- ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) and dicyclohexylcarbodiimide (DCC), optionally used with N-hydroxysuccinimide (NHS) and/or N-hydroxysulfosuccinimide (sulfo- NHS). Other cross-linkers include those for forming a covalent bond between an amino group (e.g., ‒NH 2 ) and a thymine moiety, such as succinimidyl-[4-(psoralen-8-yloxy)]-butyrate (SPB); a hydroxyl group (e.g., ‒OH) and a sulfur-containing group (e.g., free thiol, ‒SH, sulfhydryl, cysteine moiety, or mercapto group), such as p-maleimidophenyl isocyanate (PMPI); between an amino group (e.g., ‒NH2) and a sulfur-containing group (e.g., free thiol, ‒ SH, sulfhydryl, cysteine moiety, or mercapto group), such as succinimidyl 4-(p- maleimidophenyl)butyrate (SMPB) and/or succinimidyl 4-(N-maleimidomethyl)cyclohexane- 1-carboxylate (SMCC); between a sulfur-containing group (e.g., free thiol, ‒SH, sulfhydryl, cysteine moiety, or mercapto group) and a carbonyl group (e.g., an aldehyde group, such as for an oxidized glycoprotein carbohydrate), such as N-beta-maleimidopropionic acid hydrazide-trifluoroacetic acid salt (BMPH), 3-(2-pyridyldithio) propionyl hydrazide (PDPH), and/or a 3-(2-pyridyldithio)propionyl group (PDP); and between a maleimide-containing group and a sulfur-containing group (e.g., free thiol, ‒SH, sulfhydryl, cysteine moiety, or mercapto group). Yet other cross-linkers include those for forming a covalent bond between two or more unsaturated hydrocarbon bonds, e.g., mediated by radical polymerization, such as a reaction of forming a covalent bond between a first alkene group and a second alkene group (e.g., a reaction between acrylate-derived monomers to form a polyacrylate, polyacrylamide, etc.). [0221] The linker can include one or more reaction pairs. In one embodiment, the reaction pair is one of a click-chemistry reaction pair, which can include a first click-chemistry group and a second click-chemistry group that reacts with that first click-chemistry group. Exemplary click-chemistry groups include, e.g., a click-chemistry group, e.g., one of a click- chemistry reaction pair selected from the group consisting of a Huisgen 1,3-dipolar cycloaddition reaction between an alkynyl group and an azido group to form a triazole- containing linker; a Diels-Alder reaction between a diene having a 4π electron system (e.g., an optionally substituted 1,3-unsaturated compound, such as optionally substituted 1,3-butadiene, 1-methoxy-3-trimethylsilyloxy-1,3-butadiene, cyclopentadiene, cyclohexadiene, or furan) and a dienophile or heterodienophile having a π electron system (e.g., an optionally substituted alkenyl group or an optionally substituted alkynyl group); a ring opening reaction with a nucleophile and a strained heterocyclyl electrophile; and a splint ligation reaction with a phosphorothioate group and an iodo group; and a reductive amination reaction with an aldehyde group and an amino group. [0222] The linker can include one or more reactive groups. Exemplary reactive groups include an amino (e.g., ‒NH 2 ), a thio (e.g., a thioalkoxy group or a thiol group), a hydroxyl, an ester (e.g., an acrylate), a carboxyl (e.g., ‒CO2H or a deprotonated form thereof), an imido (e.g., a maleimido or a succinimido), an epoxide, an isocyanate, an isothiocyanate, an anhydride, an amido, a carbamido (e.g., a urea derivative), an azide, an optionally substituted alkynyl, or an optionally substituted alkenyl. [0223] In other embodiments, the linker can include a binding reaction signature, which arises from reacting a binding reaction pair. Exemplary binding groups and binding reaction pairs include those for forming a covalent bond between biotin and avidin, biotin and streptavidin, biotin and neutravidin, desthiobiotin and avidin (or a derivative thereof, such as streptavidin or neutravidin), hapten and an antibody, an antigen and an antibody, a primary antibody and a secondary antibody, and lectin and a glycoprotein. EXAMPLES Example 1: Overcoming ALK resistance with covalent cysteine-reactive inhibitors [0224] Cysteine druggability mapping (CDM) was used to profile ALK fusion cell lines and patient tissues (FIG.5). A small molecule screen was performed with a library (e.g., +2,500) of advanced cysteine reactive inhibitors to identify compounds that bind covalently to targets identified in CDM analysis (FIG.6). In particular, compound 1C9 was identified, and its mechanism of action in dimerizing EML4 was investigated (FIG.7A-7B). The interaction of EML4-ALK domains with 1C9 was studied. In particular, the coiled-coiled domain of EML4 is present during dimerization (FIG.8A-8B). In addition, at least one cysteine in the construct is present during dimerization (FIG.9A-9C). Reactive cysteines in EML4 were tested with 1C9 by alanine mutation of cysteine positions (FIG.10A-10B). [0225] FIG.11 provides a non-limiting hypothesis of 1C9 action. Without wishing to be limited by mechanism or theory, an aromatic group (e.g., such as benzyl, phenyl, and the like) can act as a specificity group that binds to a specific target site. For EML4, the specific target site can include the coiled-coiled domain. In addition, at least two reactive moieties (e.g., acetyl halides, alkenyl, alkynyl, an electrophilic group, and the like) can form covalent bonds with respective reactive sites for the target. For EML4, the reactive sites can include cysteine. In turn, the reactive moiety can be any that forms a covalent bond with cysteine. In this way, compounds can be designed to have any combination of specificity group(s) and reactive moiety(ies) to binds to and covalently react with a target of interest. [0226] Off-target binding and dimerization of 1C9 was determined by gel-based proteomic analysis (FIG.12A-12B). Results are provided in FIG.13A-13B, in which PSME1, PSME2, and TMX1 constitute potential dimer-forming proteins. [0227] Custom chemical synthesis and screening of a double warhead library were performed (FIG.14A-14C). ALK cysteine‐reactive compounds were validated by assaying cell killing in cell models and in primary patient-derived ALK positive lung cancer lines (FIG. 15A-15C). FIG.16 shows a non-limiting schematic of a PROTAC including 1C9 with a linker and a cereblon ligand. [0228] Further studies (e.g., to facilitate the hit-to-lead process) can include one or more of the following: determining the structure of 1C9 and EML4 covalently bound complex; guided with the 1C9-EML4 structure, optimizing and/or improving the potency of EML4 binder; exploring the effectiveness of PROTAC in degrading ALK; and/or evaluating the cytotoxicity and cell signaling impact of the optimized compounds. [0229] In addition, a covalently-bound dimerizing system can be designed and engineered. 1C9 may dimerize any candidate protein containing the EML4 coiled-coil domain and cysteine. As seen in FIG.17A, adding the coiled-coil (CC) of EML4 to EGFP exhibited dimerization. In addition to dimers, trimers and tetramers (see, e.g., FIG.17B) can be designed by mutating and changing the amino acid pairing in the coiled-coil domain. In this way, multimers (e.g., dimers, trimer, tetramers, etc.) of coiled-coil domains can be engineered, and such engineered domains can be attached to any candidate protein. In turn, compounds that target such engineered domains can be designed, identified, tested, and validated. For instance, compounds can include one or more specificity groups that bind to a specific target site in the engineered domain, as well as one or more reactive moieties that react with and form covalent bonds with reactive sites in proximity to the engineered domain. Example 2: Overcoming ALK resistance with covalent inhibitors in lung cancer [0230] The EML4-ALK fusion gene (see, e.g., FIG.18) is the main oncogenic driver in 5% of non-small cell lung cancer and has been effectively targeted using ALK-specific tyrosine kinase inhibitors (ALK TKI). While survival rates have improved steadily with each new generation of ALK TKI, resistance generally develops, including second site ALK kinase mutations as well as by-pass track activation. Since almost all anti-ALK approaches have focused on kinase domain inhibition, described herein are inhibitors with alternative mechanisms of action against ALK to overcome current drug resistance. [0231] Cysteine-reactive small molecule drugs may provide new mechanisms of target inhibition (FIG.19A-19B), and clinically successful examples of recent FDA-approved drugs in NSCLC include afatinib, ibrutinib, osimertinib, sotorasib, and adagrasib (see, e.g., FIG. 19C). Described herein are cysteine-reactive covalent inhibitors of EML4-ALK that covalently bind to ALK and inhibits its activation. Using cysteine druggability mapping (CDM), a proteome-wide mass spectrometry target engagement assay, the landscape of reactive cysteines in ALK-positive cell lines was determined, thereby identifying various targetable cysteines within the MAPK pathway and within the EML4-ALK fusion protein itself. To identify small molecules that modulate ALK activation, degradation, and downstream signaling, a high-content phosphorylated protein screen was conducted by testing 4,400 reactive cysteine compounds in a multiplex library including 10 compounds per pool (FIG.20A) and in an expanded library including individual compounds (FIG.20B). About 20 potential hits were identified that impacted ALK phosphorylation or expression (FIG.20C). [0232] The mechanism of action of 1C9 was further studied, in which EML4 appears to be present during dimerization and at least one cysteine is present during dimerization (FIG. 21A). In addition, use of 1C9 dimerized ALK resistant mutant cells (FIG.21B). A decrease in ALK expression with 1C9 treatment was observed over time, which led to a non-limiting hypothesis that 1C9 dimerized (or crosslinked) EML4ALK, and this may result in degradation (FIG.22). Live-cell imaging was conducted at the single-cell level within 24 hours of treatment; and loss of ALK expression over time was observed, while adding the proteasome inhibitor restored the expression (FIG.23A-23B). [0233] Using proteomic analysis, the comparative specificity of compounds were determined and ranked based on p-ALK reduction efficiency and on their off-target binding patterns. Gel-based proteomic experiments allow for determination of crosslinking by analyzing protein molecular weight shift within the proteome (FIG.24A-24B). [0234] In order to improve target specificity and potency, a chemical library was developed and screened (FIG.25A). In particular, SH043 possessed increased specificity toward ALK crosslinking, as compared to PSME1 (FIG.25B). The cell viability assay shows that SH043 presents more toxicity toward ALK-positive lung cancer cells, as compared to ALK-negative cells (FIG.26). One non-limiting, working model is that a compound can be configured to bind covalently to at least one cysteine in EML4-ALK and can facilitate crosslinking (e.g., dimerization, trimerization, etc.) of the EML4-ALK, resulting in its degradation (FIG.27). [0235] Hit-to-lead development can include identifying a compound that binds to the EML4 portion of the fusion, and its mechanism of action can be assessed. To further optimize the potency of the compound, a library of compounds (e.g., several hundred analog compounds) can be designed, synthesized, and tested. By applying the hit compounds from the screen in ALK TKI-resistant models, the ability of these compounds to overcome ALK resistance can be evaluated. In some embodiments, a EML4-ALK covalent compound can bind and target the EML4 domain, which can be used, e.g., to potentially overcome ALK resistance. [0236] Whilst the invention has been disclosed in particular embodiments, it will be understood by those skilled in the art that certain substitutions, alterations and/or omissions may be made to the embodiments without departing from the spirit of the invention. Accordingly, the foregoing description is meant to be exemplary only, and should not limit the scope of the invention. All references (including those listed above), scientific articles, patent publications, and any other documents cited herein are hereby incorporated by reference for the substance of their disclosure.
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